Михаил Никитин - Происхождение жизни. От туманности до клетки

Robertson, M. P., Knudsen, S. M. & Ellington, A. D. In vitro selection of ribozymes dependent on peptides for activity // RNA , 2004, vol. 10, pp. 114–127. DOI: 10.1261/rna.5900204

Rodin, A. S., Szathmáry, E. & Rodin, S. N. On origin of genetic code and tRNA before translation // Biology Direct , 2011, vol. 6, p. 14. DOI: 10.1186/1745-6150-6-14

Rodin, A. S., Szathmáry, E. & Rodin, S. N. One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation // Biology Direct , 2009, vol. 4, p. 4. DOI: 10.1186/1745-6150-4-4

Rodin, S. N. & Ohno, S. Two types of aminoacyl-trna synthetases could be originally encoded by complementary strands of the same nucleic ACID // Origins of life and evolution of the biosphere , 1995, vol. 25, pp. 565–589. DOI: 10.1007/BF01582025

Root-Bernstein, M. & Root-Bernstein, R. The ribosome as a missing link in the evolution of life // Journal of Theoretical Biology , 2015, vol. 367, pp. 130–158. DOI: 10.1016/j.jtbi.2014.11.025

Roth, A. & Breaker, R. R. An amino acid as a cofactor for a catalytic polynucleotide // Proceedings of the National Academy of Sciences , 1998, vol. 95, pp. 6027–6031.

Rothschild, L. J. The evolution of photosynthesis… again? // Philosophical Transactions of the Royal Society of London B: Biological Sciences , 2008, vol. 363, pp. 2787–2801. DOI: 10.1098/rstb.2008.0056

Russell, M. J. et al. The Drive to Life on Wet and Icy Worlds // Astrobiology , 2014, vol. 14, pp. 308–343. DOI: 10.1089/ast.2013.1110

Ryu, Y., Kim, K.-J., Roessner, C. A. & Scott, A. I. Decarboxylative Claisen condensation catalyzed by in vitro selected ribozymes // Chemical Communications , 2006, vol. 13, pp. 1439–1441. DOI: 10.1039/b517160a

Saladino, R., Crestini, C., Ciciriello, F., Costanzo, G. & Di Mauro, E. Formamide Chemistry and the Origin of Informational Polymers // Chemistry & Biodiversity , 2007, vol. 4, pp. 694–720. DOI: 10.1002/cbdv.200790059

Sato, T., Atomi, H. & Imanaka, T. Archaeal Type III RuBisCOs Function in a Pathway for AMP Metabolism // Science , 2007, vol. 315, pp. 1003–1006. DOI: 10.1126/science.1135999

Schoepp-Cothenet, B. et al. On the universal core of bioenergetics // Biochimica et Biophysica Acta (BBA) – Bioenergetics , 2013, vol. 1827, pp. 79–93. DOI: 10.1016/j. bbabio.2012.09.005

Schöning, K.-U. et al. Chemical Etiology of Nucleic Acid Structure: The α-Threofuranosyl– (3'→2') Oligonucleotide System // Science , 2000, vol. 290, pp. 1347–1351. DOI: 10.1126/science.290.5495.1347

Sczepanski, J. T. & Joyce, G. F. A cross-chiral RNA polymerase ribozyme // Nature , 2014, vol. 515, pp. 440–442. DOI: 10.1038/nature13900

Sen, D. & Poon, L. C. H. RNA and DNA complexes with hemin [Fe (III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean? // Critical Reviews in Biochemistry and Molecular Biology , 2011, vol. 46, pp. 478–492. DOI: 10.3109/10409238.2011.618220

Senanayake, S. D. & Idriss, H. Photocatalysis and the origin of life: synthesis of nucleoside bases from formamide on TiO2 (001) single surfaces // Proceedings of the National Academy of Sciences of the United States of America , 2006, vol. 103, pp. 1194–1198. DOI: 10.1073/pnas.0505768103

Shimada, H. & Yamagishi, A. Stability of Heterochiral Hybrid Membrane Made of Bacterial sn-G3P Lipids and Archaeal sn-G1P Lipids // Biochemistry , 2011, vol. 50, pp. 4114–4120. DOI: 10.1021/bi200172d

Shimizu, M., Yamagishi, A., Kinoshita, K., Shida, Y. & Oshima, T. Prebiotic Origin of Glycolytic Metabolism: Histidine and Cysteine can Produce Acetyl CoA from Glucose via Reactions Homologous to Non-phosphorylated Entner-Doudoroff Pathway // Journal of Biochemistry , 2008, vol. 144, pp. 383–388. DOI: 10.1093/jb/mvn073

Silverman, S. K. Deoxyribozymes: DNA catalysts for bioorganic chemistry // Organic & Biomolecular Chemistry , 2004, vol. 2, pp. 2701–2706. DOI: 10.1039/B411910J

Sivan, O., Antler, G., Turchyn, A. V., Marlow, J. J. & Orphan, V. J. Iron oxides stimulate sulfate-driven anaerobic methane oxidation in seeps // Proceedings of the National Academy of Sciences , 2014, vol. 111, pp. E4139 – E4147. DOI: 10.1073/pnas.1412269111

Smith, E. & Morowitz, H. J. Universality in intermediary metabolism // Proceedings of the National Academy of Sciences of the United States of America , 2004, vol. 101, pp. 13168–13173. DOI: 10.1073/pnas.0404922101

Solov'yov, I. A. & Schulten, K. Magnetoreception through Cryptochrome May Involve Superoxide // Biophysical Journal , 2009, vol. 96, pp. 4804–4813. DOI: 10.1016/j.bpj.2009.03.048

Sousa, F. L. et al. Early bioenergetic evolution // Philosophical Transactions of the Royal Society B: Biological Sciences , 2013, vol. 368, Article ARTN 20130088. DOI: 10.1098/rstb.2013.0088

Spang, A. et al. Complex archaea that bridge the gap between prokaryotes and eukaryotes // Nature advance online publication (2015). DOI: 10.1038/nature14447

Szabó-Nagy, A. & Keszthelyi, L. Demonstration of the parity-violating energy difference between enantiomers // Proceedings of the National Academy of Sciences , 1999, vol. 96, pp. 4252–4255. DOI: 10.1073/pnas.96.8.4252

Szathmáry, E. Coding coenzyme handles: a hypothesis for the origin of the genetic code // Proceedings of the National Academy of Sciences , 1993, vol. 90, pp. 9916–9920. DOI: 10.1073/pnas.90.21.9916

Szostak, J. W. The eightfold path to non-enzymatic RNA replication // Journal of Systems Chemistry , 2012, vol. 3, p. 2. DOI: 10.1186/1759-2208-3-2

Takemura, M. Poxviruses and the origin of the eukaryotic nucleus // Journal of molecular evolution , 2001, vol. 52, pp. 419–425. DOI: 10.1007/s002390010171

Takemura, M., Yokobori, S. & Ogata, H. Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses // Journal of Molecular Evolution , 2015, vol. 81, pp. 24–33. DOI: 10.1007/s00239-015-9690-z

Tang, K.-H. et al. Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus // BMC Genomics , 2011, vol. 12, p. 334. DOI: 10.1186/1471-2164-12-334

Tang, K.-H., Yue, H. & Blankenship, R. E. Energy metabolism of Heliobacterium modesticaldum during phototrophic and chemotrophic growth // BMC Microbiology , 2010, vol. 10, p. 150. DOI: 10.1186/1471-2180-10-150

Telegina, T. A., Kolesnikov, M. P., Vechtomova, Y. L., Buglak, A. A. & Kritsky, M. S. Abiotic photophosphorylation model based on abiogenic flavin and pteridine pigments // Journal of molecular evolution , 2013, vol. 76, pp. 332–342. DOI: 10.1007/s00239-013-9562-3

The Limits of Organic Life in Planetary Systems. Available at: http://books.nap.edu/openbook.php?record_id=11919&page=69. (Accessed: 3rd September 2015).

Tielens, A. G. M., Rotte, C., van Hellemond, J. J. & Martin, W. Mitochondria as we don't know them // Trends in Biochemical Sciences , 2002, vol. 27, pp. 564–572. DOI: 16/S0968–0004(02)02193-X

Tsiganis, K., Gomes, R., Morbidelli, A. & Levison, H. F. Origin of the orbital architecture of the giant planets of the Solar System // Nature , 2005, vol. 435, pp. 459–461. DOI: 10.1038/nature03539

Tsukiji, S., Pattnaik, S. B. & Suga, H. Reduction of an Aldehyde by a NADH/Zn2+-Dependent Redox Active Ribozyme // Journal of the American Chemical Society , 2004, vol. 126, pp. 5044–5045. DOI: 10.1021/ja0495213

Turick, C. E., Ekechukwu, A. A., Milliken, C. E., Casadevall, A. & Dadachova, E. Gamma radiation interacts with melanin to alter its oxidation – reduction potential and results in electric current production // Bioelectrochemistry , 2011, vol. 82, pp. 69–73. DOI: 10.1016/j.bioelechem.2011.04.009

Vakulenko, S. & Grigoriev, D. Evolution in random environment and structural instability // Journal of Mathematical Sciences , 2006, vol. 138, pp. 5644–5662. DOI: 10.1007/s10958-006-0333-1

Van Flandern, T. C. & Harrington, R. S. A dynamical investigation of the conjecture that Mercury is an escaped satellite of Venus // Icarus , 1976, vol. 28, pp. 435–440. DOI: 10.1016/0019–1035(76)90116–0

Viedma, C., Ortiz, J. E., Torres, T. de, Izumi, T. & Blackmond, D. G. Evolution of Solid Phase Homochirality for a Proteinogenic Amino Acid // Journal of the American Chemical Society , 2008, vol. 30, pp. 15274–15275. DOI: 10.1021/ja8074506

Vlassov, A. V., Johnston, B. H., Landweber, L. F. & Kazakov, S. Ligation activity of fragmented ribozymes in frozen solution: implications for the RNA world // Nucleic Acids Research , 2004, vol. 2, pp. 2966–2974. DOI: 10.1093/nar/gkh601

Wacey, D., McLoughlin, N., Whitehouse, M. J. & Kilburn, M. R. Two coexisting sulfur metabolisms in a ca. 3400 Ma sandstone // Geology , 2010, vol. 38, pp. 1115–1118. DOI: 10.1130/G31329.1

Wächtershäuser, G. From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya // Philosophical transactions of the Royal Society of London. Series B, Biological sciences , 2006, vol. 361, pp. 1787–1806; discussion 1806–1808. DOI: 10.1098/rstb.2006.1904

Weber, A. L. & Miller, S. L. Reasons for the occurrence of the twenty coded protein amino acids // Journal of Molecular Evolution , 1981, vol. 17, pp. 273–284. DOI: 10.1007/BF01795749

Williams, G. E. Geological constraints on the Precambrian history of Earth's rotation and the Moon's orbit // Reviews of Geophysics , 2000, vol. 38, pp. 37–59. DOI: 10.1029/1999RG900016

Wochner, A., Attwater, J., Coulson, A. & Holliger, P. Ribozyme-Catalyzed Transcription of an Active Ribozyme // Science , 2011, vol. 32, pp. 209–212. DOI: 10.1126/science.1200752

Wray, J. J. et al. Prolonged magmatic activity on Mars inferred from the detection of felsic rocks // Nature Geoscience , 2013, vol. 6, pp. 1013–1017. DOI: 10.1038/ngeo1994

Yu, H., Zhang, S. & Chaput, J. C. Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor // Nature Chemistry , 2012, vol. 4, pp. 183–187. DOI: 10.1038/nchem.1241

Yutin, N. & Koonin, E. V. Archaeal origin of tubulin // Biology direct , 2012, vol. 7, p. 10. DOI: 10.1186/1745-6150-7-10

Yutin, N., Wolf, M. Y., Wolf, Y. I. & Koonin, E. V. The origins of phagocytosis and eukaryogenesis // Biology direct , 2009, vol. 4, p. 9. DOI: 10.1186/1745-6150-4-9

Zahnle, K. et al. Emergence of a Habitable Planet // Space Science Reviews , 2007, vol. 129, pp. 35–78. DOI: 10.1007/s11214-007-9225-z

Zahnle, K., Schaefer, L. & Fegley, B. Earth's Earliest Atmospheres // Cold Spring Harbor Perspectives in Biology , 2010, vol. 2. DOI: 10.1101/cshperspect.a004895

Zarzycki, J., Brecht, V., Müller, M. & Fuchs, G. Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2 fixation cycle in Chloroflexus aurantiacus // Proceedings of the National Academy of Sciences , 2009, vol. 106, pp. 21317–21322. DOI: 10.1073/pnas.0908356106

Zhang, L., Peritz, A. & Meggers, E. A Simple Glycol Nucleic Acid // Journal of the American Chemical Society , 2005, vol. 127, pp. 4174–4175. DOI: 10.1021/ja042564z

Наглядное представление об устойчивости планетных орбит можно получить в онлайн-игре Super Planet Crash ( http://www.stefanom.org/spc/). – Здесь и далее прим. авт.