Евгений Кунин - Логика случая. О природе и происхождении биологической эволюции
- Название:Логика случая. О природе и происхождении биологической эволюции
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- Издательство:Литагент «Центрполиграф»a8b439f2-3900-11e0-8c7e-ec5afce481d9
- Год:2014
- Город:Москва
- ISBN:978-5-227-04982-7
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Евгений Кунин - Логика случая. О природе и происхождении биологической эволюции краткое содержание
В этой амбициозной книге Евгений Кунин освещает переплетение случайного и закономерного, лежащих в основе самой сути жизни. В попытке достичь более глубокого понимания взаимного влияния случайности и необходимости, двигающих вперед биологическую эволюцию, Кунин сводит воедино новые данные и концепции, намечая при этом дорогу, ведущую за пределы синтетической теории эво люции. Он интерпретирует эволюцию как стохастический процесс, основанный на заранее непредвиденных обстоятельствах, ограниченный необходимостью поддержки клеточной организации и направляемый процессом адаптации. Для поддержки своих выводов он объединяет между собой множество концептуальных идей: сравнительную геномику, проливающую свет на предковые формы; новое понимание шаблонов, способов и непредсказуемости процесса эволюции; достижения в изучении экспрессии генов, распространенности белков и других фенотипических молекулярных характеристик; применение методов статистической физики для изучения генов и геномов и новый взгляд на вероятность самопроизвольного появления жизни, порождаемый современной космологией.
Логика случая демонстрирует, что то понимание эволюции, которое было выработано наукой XX века, является устаревшим и неполным, и обрисовывает фундаментально новый подход – вызывающий, иногда противоречивый, но всегда основанный на твердых научных знаниях.
Логика случая. О природе и происхождении биологической эволюции - читать онлайн бесплатно ознакомительный отрывок
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Trifonov, E. N., I. Gabdank, D. Barash, and Y. Sobolevsky. (2006) Primordia Vita. Deconvolution from Modern Sequences. Orig Life Evol Biosph 36: 559–565.
Tuite, M. F., and T. R. Serio. (2010) The Prion Hypothesis: From Biological Anomaly to Basic Regulatory Mechanism. Nat Rev Mol Cell Biol 11: 823–833.
Turk, R. M., N. V. Chumachenko, and M. Yarus. (2010) Multiple Translational Products from a Five-Nucleotide Ribozyme. Proc Natl Acad Sci USA 107: 4,585—4,589.
Tyedmers, J., M. L. Madariaga, and S. Lindquist. (2008) Prion Switching in Response to Environmental Stress. PLoS Biol 6: e294.
Ulrich, L. E., E. V. Koonin, and I. B. Zhulin. (2005) One-Component Systems Dominate Signal Transduction in Prokaryotes. Trends Microbiol 13: 52–56.
Vabulas, R. M., S. Raychaudhuri, M. Hayer-Hartl, and F. U. Hartl. (2010) Protein Folding in the Cytoplasm and the Heat Shock Response. Cold Spring Harb Perspect Biol 2: a004390.
Van den Born, E., M. V. Omelchenko, A. Bekkelund, V. Leihne, E. V. Koonin, V. V. Dolja, and P. O. Falnes. (2008) Viral Alkb Proteins Repair RNA Damage by Oxidative Demethylation. Nucleic Acids Res 36: 5,451—5,461.
Van der Giezen, M. (2009) Hydrogenosomes and Mitosomes: Conservation and Evolution of Functions. J Eukaryot Microbiol 56: 221–231.
Van der Oost, J., M. M. Jore, E. R. Westra, M. Lundgren, and S. J. Brouns. (2009) CRISPR-Based Adaptive and Heritable Immunity in Prokaryotes. Trends Biochem Sci 34: 401–407.
Van Etten, J. L., L. C. Lane, and D. D. Dunigan. (2010) DNA Viruses: The Really Big Ones (Giruses). Annu Rev Microbiol 64: 83–99.
Van Melderen, L. (2010) Toxin – Antitoxin Systems: Why So Many, What For? Curr Opin Microbiol 13: 781–785.
Van Melderen, L., and M. Saavedra De Bast. (2009) Bacterial Toxin – Antitoxin Systems: More Than Selfish Entities? PLoS Genet 5: e1000437.
Van Niel, C. B. (1955) Natural Selection in the Microbial World. J Gen Microbiol 13: 201–217.
Van Nimwegen, E. (2003) Scaling Laws in the Functional Content of Genomes. Trends Genet 19: 479–484.
Van Valen, L. (1973) A New Evolutionary Law. Evol. Tehory 1: 1—30.
Vargas, A. O. (2009) Did Paul Kammerer Discover Epigenetic Inheritance? A Modern Look at the Controversial Midwife Toad Experiments. J Exp Zool B Mol Dev Evol 312: 667–678.
Venn, J. (1866) The Logic of Chance: An Essay on the Foundations and Province of the Theory of Probability, with Especial Reference to its Application to Moral and Socila Science. London and Cambridge: MacMillan and Co.
Venters, B. J., and B. F. Pugh. (2009) How Eukaryotic Genes Are Transcribed. Crit Rev Biochem Mol Biol 44: 117–141.
Veretnik, S., C. Wills, P. Youkharibache, R. E. Valas, and P. E. Bourne. (2009) Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome. PLoS Comput Biol 5: e1000315.
Vetsigian, K., C. Woese, and N. Goldenfeld. (2006) Collective Evolution and the Genetic Code. Proc Natl Acad Sci USA 103: 10,696—10,701.
Vilenkin, A. (1983) The Birth of Inflationary Universes. Phys. Rev. D 27: 2,848.
Vilenkin, A. (2007) Many Worlds in One: The Search for Other Universes. Boston: Hill and Wang.
Vogel, G. (1997) Prusiner Recognized for Once-Heretical Prion Theory. Science 278: 214.
Vogel, G., and E. Pennisi. (2009) Physiology Nobel. U.S. Researchers Recognized for Work on Telomeres. Science 326: 212–213.
Volker, C., and A. N. Lupas. (2002) Molecular Evolution of Proteasomes. Curr Top Microbiol Immunol 268: 1—22.
Von Dohlen, C. D., S. Kohler, S. T. Alsop, and W. R. McManus. (2001) Mealybug Beta-Proteobacterial Endosymbionts Contain Gamma-Proteobacterial Symbionts. Nature 412: 433–436.
Von Neumann, J. (1966) Theory of Self-Reproducing Automata. Urbana, IL: University of Illinois Press.
Wachtershauser, G. (1997) The Origin of Life and Its Methodological Challenge. J Theor Biol 187: 483–494.
Waddington, C. H., and E. Robertson. (1966) Selection for Developmental Canalisation. Genet Res 7: 303–312.
Wagner, A. (2008a) Neutralism and Selectionism: A Network-Based Reconciliation. Nat Rev Genet 9: 965–974.
Wagner, A. (2008b) Robustness and Evolvability: A Paradox Resolved. Proc Biol Sci 275: 91—100.
Walker, J. E., M. Saraste, M. J. Runswick, and N. J. Gay. (1982) Distantly Related Sequences in the Alpha – and Beta-Subunits of Atp Synthase, Myosin, Kinases, and Other Atp-Requiring Enzymes and a Common Nucleotide Binding Fold. Embo J 1: 945–951.
Wang, E. T., R. Sandberg, S. Luo, I. Khrebtukova, L. Zhang, C. Mayr, S. F. Kingsmore, G. P. Schroth, and C. B. Burge. (2008) Alternative Isoform Regulation in Human Tissue Transcriptomes. Nature 456: 470–476.
Wang, X., Y. Kim, Q. Ma, S. H. Hong, K. Pokusaeva, J. M. Sturino, and T. K. Wood. (2010) Cryptic Prophages Help Bacteria Cope with Adverse Environments. Nat Commun 1: 147.
Wang, Z., and J. Zhang. (2009) Why Is the Correlation Between Gene Importance and Gene Evolutionary Rate So Weak? PLoS Genet 5: e1000329.
Watson, J. D., and F. H. Crick. (1953a) Genetical Implications of the Structure of Deoxyribonucleic Acid. Nature 171: 964–967.
Watson, J. D., and F. H. Crick. (1953b) Molecular Structure of Nucleic Acids; a Structure for Deoxyribose Nucleic Acid. Nature 171: 737–738.
Watts, D. J. (2004) Six Degrees: The Science of a Connected Age. New York: W. W. Norton & Co.
Weinberg, S. (1994) Dreams of a Final Theory: The Scientist’s Search for the Ultimate Laws of Nature. New York: Vintage.
Weinreich, D. M., N. F. Delaney, M. A. Depristo, and D. L. Hartl. (2006) Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins. Science 312: 111–114.
Weissmann, A. (1893) The Germ-Plasm. A Theory of Heredity. London: Charles Scribner’s Sons.
Whitehead, D. J., C. O. Wilke, D. Vernazobres, and E. Bornberg-Bauer. (2008) The Look-Ahead Effect of Phenotypic Mutations. Biol Direct 3: 18.
Wilke, C. O., J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami. (2001) Evolution of Digital Organisms at High Mutation Rates Leads to Survival of the Flattest. Nature 412: 331–333.
Wilson, A. C., S. S. Carlson, and T. J. White. (1977) Biochemical Evolution. Annu Rev Biochem 46: 573–639.
Wochner, A., J. Attwater, A. Coulson, and P. Holliger. (2011) Ribozyme-Catalyzed Transcription of an Active Ribozyme. Science 332: 209–212.
Woese, C. (1967) The Genetic Code. New York: Harper & Row.
Woese, C. (1998) The Universal Ancestor. Proc Natl Acad Sci USA 95: 6,854—6,859.
Woese, C. R. (1987) Bacterial Evolution. Microbiol Rev 51: 221–271.
Woese, C. R. (2002) On the Evolution of Cells. Proc Natl Acad Sci USA 99: 8,742—8,747.
Woese, C. R., and G. E. Fox. (1977) The Concept of Cellular Evolution. J Mol Evol 10: 1–6.
Woese, C. R., and N. Goldenfeld. (2009) How the Microbial World Saved Evolution from the Scylla of Molecular Biology and the Charybdis of the Modern Synthesis. Microbiol Mol Biol Rev 73: 14–21.
Woese, C. R., O. Kandler, and M. L. Wheelis. (1990) Towards a Natural System of Organisms: Proposal for the Domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87: 4,576—4,579.
Wohlgemuth, I., M. Beringer, and M. V. Rodnina. (2006) Rapid Peptide Bond Formation on Isolated 50s Ribosomal Subunits. EMBO Rep 7: 699–703.
Wolf, Y. I., L. Aravind, N. V. Grishin, and E. V. Koonin. (1999a) Evolution of Aminoacyl-tRNA Synthetases – Analysis of Unique Domain Architectures and Phylogenetic Trees Reveals a Complex History of Horizontal Gene Transfer Events. Genome Res 9: 689–710.
Wolf, Y. I., S. E. Brenner, P. A. Bash, and E. V. Koonin. (1999b) Distribution of Protein Folds in the Three Superkingdoms of Life. Genome Res 9: 17–26.
Wolf, Y. I., L. Carmel, and E. V. Koonin. (2006) Unifying Measures of Gene Function and Evolution. Proc Biol Sci 273: 1,507—1,515.
Wolf, Y. I., I. V. Gopich, D. J. Lipman, and E. V. Koonin. (2010) Relative Contributions of Intrinsic Structural-Functional Constraints and Translation Rate to the Evolution of Protein-Coding Genes. Genome Biol Evol 2: 190–199.
Wolf, Y. I., and E. V. Koonin. (2007) On the Origin of the Translation System and the Genetic Code in the RNA World by Means of Natural Selection, Exaptation, and Subfunctionalization. Biol Direct 2: 14.
Wolf, Y. I., P. S. Novichkov, G. P. Karev, E. V. Koonin, and D. J. Lipman. (2009) The Universal Distribution of Evolutionary Rates of Genes and Distinct Characteristics of Eukaryotic Genes of Different Apparent Ages. Proc Natl Acad Sci USA 106: 7,273—7,280.
Wolf, Y. I., I. B. Rogozin, N. V. Grishin, and E. V. Koonin. (2002) Genome Trees and the Tree of Life. Trends Genet 18: 472–479.
Wolf, Y. I., I. B. Rogozin, A. S. Kondrashov, and E. V. Koonin. (2001) Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context. Genome Res 11: 356–372.
Woods, R. J., J. E. Barrick, T. F. Cooper, U. Shrestha, M. R. Kauth, and R. E. Lenski. (2011) Second-Order Selection for Evolvability in a Large Escherichia Coli Population. Science 331: 1,433—1,436.
Woodson, S. A. (2010) Taming Free Energy Landscapes with RNA Chaperones. RNA Biol 7: 38–47.
Wozniak, R. A., and M. K. Waldor. (2010) Integrative and Conjugative Elements: Mosaic Mobile Genetic Elements Enabling Dynamic Lateral Gene Flow. Nat Rev Microbiol 8: 552–563.
Wright, G. D. (2007) The Antibiotic Resistome: The Nexus of Chemical and Genetic Diversity. Nat Rev Microbiol 5: 175–186.
Wu, D., S. C. Daugherty, S. E. Van Aken, G. H. Pai, K. L. Watkins, H. Khouri, L. J. Tallon, J. M. Zaborsky, H. E. Dunbar, P. L. Tran, N. A. Moran, and J. A. Eisen. (2006) Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters. PLoS Biol 4: e188.
Wunderlich, Z., and L. A. Mirny. (2009) Different Gene Regulation Strategies Revealed by Analysis of Binding Motifs. Trends Genet 25: 434–440.
Yang, D., Y. Oyaizu, H. Oyaizu, G. J. Olsen, and C. R. Woese. (1985) Mitochondrial Origins. Proc Natl Acad Sci USA 82: 4,443—4,447.
Yang, Z. (2007) Paml 4: Phylogenetic Analysis by Maximum Likelihood. Mol Biol Evol 24: 1,586—1,591.
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